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1.
Sci Rep ; 13(1): 15568, 2023 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-37730884

RESUMEN

Most of studied social interactions arise from dyadic relations. An exception is Heider Balance Theory that postulates the existence of triad dynamics, which however has been elusive to observe. Here, we discover a sufficient condition for the Heider dynamics observability: assigning the edge signs according to multiple opinions of connected agents. Using longitudinal records of university student mutual contacts and opinions, we create a coevolving network on which we introduce models of student interactions. These models account for: multiple topics of individual student opinions, influence of such opinions on dyadic relations, and influence of triadic relations on opinions. We show that the triadic influence is empirically measurable for static and dynamic observables when signs of edges are defined by multidimensional differences between opinions on all topics. Yet, when these signs are defined by a difference between opinions on each topic separately, the triadic interactions' influence is indistinguishable from noise.

2.
Sci Rep ; 13(1): 8303, 2023 05 23.
Artículo en Inglés | MEDLINE | ID: mdl-37221210

RESUMEN

Organellar genomes of liverworts are considered as one of the most stable among plants, with rare events of gene loss and structural rearrangements. However, not all lineages of liverworts are equally explored in the field of organellar genomics, and subclass Pellidae is one of the less known. Hybrid assembly, using both short- and long-read technologies enabled the assembly of repeat-rich mitogenomes of Pellia and Apopellia revealing extraordinary reduction of length in the latter which impacts only intergenic spacers. The mitogenomes of Apopellia were revealed to be the smallest among all known liverworts-109 k bp, despite retaining all introns. The study also showed the loss of one tRNA gene in Apopellia mitogenome, although it had no impact on the codon usage pattern of mitochondrial protein coding genes. Moreover, it was revealed that Apopellia and Pellia differ in codon usage by plastome CDSs, despite identical tRNA gene content. Molecular identification of species is especially important where traditional taxonomic methods fail, especially within Pellidae where cryptic speciation is well recognized. The simple morphology of these species and a tendency towards environmental plasticity make them complicated in identification. Application of super-barcodes, based on complete mitochondrial or plastid genomes sequences enable identification of all cryptic lineages within Apopellia and Pellia genera, however in some particular cases, mitogenomes were more efficient in species delimitation than plastomes.


Asunto(s)
Anemone , Genoma Mitocondrial , Genoma de Plastidios , Hepatophyta , Filogenia , Mitocondrias
3.
Am J Physiol Endocrinol Metab ; 324(5): E437-E448, 2023 05 01.
Artículo en Inglés | MEDLINE | ID: mdl-37018654

RESUMEN

We aimed to investigate the human skeletal muscle (SkM) DNA methylome after exercise in low-carbohydrate (CHO) energy-balance (with high-fat) conditions compared with exercise in low-CHO energy-deficit (with low-fat) conditions. The objective was to identify novel epigenetically regulated genes and pathways associated with "train-low sleep-low" paradigms. The sleep-low conditions included nine males that cycled to deplete muscle glycogen while reaching a set energy expenditure. Postexercise, low-CHO meals (protein matched) completely replaced (using high fat) or only partially replaced (low fat) the energy expended. The following morning, resting baseline biopsies were taken and the participants then undertook 75 minutes of cycling exercise, with skeletal muscle biopsies collected 30 minutes and 3.5 hours postexercise. Discovery of genome-wide DNA methylation was undertaken using Illumina EPIC arrays, and targeted gene expression analysis was conducted by quantitative RT-PCR. At baseline, participants under energy balance (high fat) demonstrated a predominantly hypermethylated (60%) profile across the genome compared to energy-deficit low-fat conditions. However, postexercise performed in energy balance (with high fat) elicited a more prominent hypomethylation signature 30 minutes postexercise in gene regulatory regions important for transcription (CpG islands within promoter regions) compared with exercise in energy-deficit (with low-fat) conditions. Such hypomethylation was enriched within pathways related to IL6-JAK-STAT signaling, metabolic processes, p53/cell cycle, and oxidative/fatty acid metabolism. Hypomethylation within the promoter regions of the genes; histone deacetylase 2 (HDAC2), MECR, IGF2, and c13orf16 were associated with significant increases in gene expression in the postexercise period in energy balance compared with an energy deficit. Furthermore, HDAC11 was oppositely regulated at the gene expression level compared with family member HDAC2, where HDAC11 was hypomethylated yet increased in energy-deficit compared with energy-balance conditions. Overall, we identify some novel epigenetically regulated genes associated with train-low sleep-low paradigms.NEW & NOTEWORTHY We identify novel epigenetically regulated genes associated with train-low sleep-low paradigms. Exercise under low-carbohydrate (CHO) energy-balance (high-fat) conditions elicited a more prominent DNA hypomethylation signature 30 minutes postexercise compared with low-CHO energy-deficit (low-fat) conditions. This was enriched within IL6-JAK-STAT signaling, metabolic processes, p53, cell cycle, oxidative phosphorylation, and fatty acid metabolism. Histone deacetylase (HDAC) family members 2, 4, 10, and 11 demonstrated hypomethylation, with HDAC2 and HDAC11 possessing alternative regulation of gene expression in energy balance versus deficit conditions.


Asunto(s)
Epigenoma , Interleucina-6 , Masculino , Humanos , Interleucina-6/metabolismo , Proteína p53 Supresora de Tumor/metabolismo , Músculo Esquelético/metabolismo , Glucógeno/metabolismo , Ácidos Grasos/metabolismo
4.
FASEB J ; 37(1): e22720, 2023 01.
Artículo en Inglés | MEDLINE | ID: mdl-36542473

RESUMEN

Cancer survivors suffer impairments in skeletal muscle in terms of reduced mass and function. Interestingly, human skeletal muscle possesses an epigenetic memory of earlier stimuli, such as exercise. Long-term retention of epigenetic changes in skeletal muscle following cancer survival and/or exercise training has not yet been studied. We, therefore, investigated genome-wide DNA methylation (methylome) in skeletal muscle following a 5-month, 3/week aerobic-training intervention in breast cancer survivors 10-14 years after diagnosis and treatment. These results were compared to breast cancer survivors who remained untrained and to age-matched controls with no history of cancer, who undertook the same training intervention. Skeletal muscle biopsies were obtained from 23 females before(pre) and after(post) the 5-month training period. InfiniumEPIC 850K DNA methylation arrays and RT-PCR for gene expression were performed. The breast cancer survivors displayed a significant retention of increased DNA methylation (i.e., hypermethylation) at a larger number of differentially methylated positions (DMPs) compared with healthy age-matched controls pre training. Training in cancer survivors led to an exaggerated number of DMPs with a hypermethylated signature occurring at non-regulatory regions compared with training in healthy age-matched controls. However, the opposite occurred in important gene regulatory regions, where training in cancer survivors elicited a considerable reduction in methylation (i.e., hypomethylation) in 99% of the DMPs located in CpG islands within promoter regions. Importantly, training was able to reverse the hypermethylation identified in cancer survivors back toward a hypomethylated signature that was observed pre training in healthy age-matched controls at 300 (out of 881) of these island/promoter-associated CpGs. Pathway enrichment analysis identified training in cancer survivors evoked a predominantly hypomethylated signature in pathways associated with cell cycle, DNA replication/repair, transcription, translation, mTOR signaling, and the proteosome. Differentially methylated region (DMR) analysis also identified genes: BAG1, BTG2, CHP1, KIFC1, MKL2, MTR, PEX11B, POLD2, S100A6, SNORD104, and SPG7 as hypermethylated in breast cancer survivors, with training reversing these CpG island/promoter-associated DMRs toward a hypomethylated signature. Training also elicited a largely different epigenetic response in healthy individuals than that observed in cancer survivors, with very few overlapping changes. Only one gene, SIRT2, was identified as having altered methylation in cancer survivors at baseline and after training in both the cancer survivors and healthy controls. Overall, human skeletal muscle may retain a hypermethylated signature as long as 10-14 years after breast cancer treatment/survival. Five months of aerobic training reset the skeletal muscle methylome toward signatures identified in healthy age-matched individuals in gene regulatory regions.


Asunto(s)
Neoplasias de la Mama , Proteínas Inmediatas-Precoces , Femenino , Humanos , Epigenoma , Neoplasias de la Mama/genética , Neoplasias de la Mama/terapia , Metilación de ADN , Epigénesis Genética , Ejercicio Físico/fisiología , Músculo Esquelético/fisiología , Islas de CpG/genética , Proteínas Inmediatas-Precoces/genética , Proteínas Supresoras de Tumor/genética
5.
Materials (Basel) ; 15(4)2022 Feb 17.
Artículo en Inglés | MEDLINE | ID: mdl-35208057

RESUMEN

This study performs a complex analysis and review of the currently applied methods of inductively heating the charge material in hot die forging processes, as well as elaborates and verifies a more effective heating method. On this basis, a device for inductive heating using variable frequency inductors was designed and constructed, which made it possible to reduce the scale and decarburization with respect to the heater used so far. In the first place, the temperature distributions in the heater in the function of time were modeled with the use of the CEDRAT FLUX software. The aim of the research was to analyze the temperature gradient and value diversification on the surface and in the material core, as well as to determine the process stability. The following stage was designing and constructing a heater with an automatic system of loading and positioning of the charge on the exit, as well as with a possibility of working in a fully automated system adjusted to the work center. The last stage of investigations was the verification of the elaborated effective heating method on the basis of a short production series and a continuous work for the period of 8 h, both in the quantitative and qualitative aspect (reduced oxidation and decarburization as well as a gradient between the core and the surface). The obtained results confirm the effectiveness of the proposed solution referring to heating the charge material, especially in the aspect of stability and repeatability of the process, as well as a significant reduction in oxidation and decarburization of the material surface.

6.
Materials (Basel) ; 14(22)2021 Nov 21.
Artículo en Inglés | MEDLINE | ID: mdl-34832461

RESUMEN

The article performs an analysis of the durability of punches applied in the process of producing a valve forging from chromium-nickel steel. A forging of this type is made in two operations: coextrusion of a long shank, followed by finishing forging in closed dies of the valve head. The product obtained in this way (after other additional finishing procedures) constitutes the key element of the combustion engine (resistant to high pressures and temperatures) in motor trucks. Unfortunately, a significant problem in this production process is a relatively low durability of the forging tools, especially the punch used in the second forging operation. The key element at this stage, deciding about the punch's further operation, is the area of the so-called "calotte". The short-term life of the tools results from very hard performance conditions present during the forging process (periodical high mechanical and thermal loads, long path of friction). The latter cause intensive abrasive wear as well as high adhesion of the forging material to the tool surface. Based on the performed studies, including the following: technology analysis, numerical modelling, macro analyses combined with 3D scanning of tool sections as well as microstructural tests and hardness measurements, it was established that it is crucial to properly select the process parameters (charge and tool temperature, tribological conditions), as even slight changes introduced into them significantly affect the operation time of the forging tools. Mastering and proper implementation of the analyzed forging technology requires numerous further studies and tests, which will enable its perfection and thus increase the durability of the tools as well as the quality of the produced items.

7.
Front Physiol ; 12: 619447, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33679435

RESUMEN

The methylome and transcriptome signatures following exercise that are physiologically and metabolically relevant to sporting contexts such as team sports or health prescription scenarios (e.g., high intensity interval training/HIIT) has not been investigated. To explore this, we performed two different sport/exercise relevant high-intensity running protocols in five male sport team members using a repeated measures design of: (1) change of direction (COD) versus; (2) straight line (ST) running exercise with a wash-out period of at least 2 weeks between trials. Skeletal muscle biopsies collected from the vastus lateralis 30 min and 24 h post exercise, were assayed using 850K methylation arrays and a comparative analysis with recent (subject-unmatched) sprint and acute aerobic exercise meta-analysis transcriptomes was performed. Despite COD and ST exercise being matched for classically defined intensity measures (speed × distance and number of accelerations/decelerations), COD exercise elicited greater movement (GPS-Playerload), physiological (HR), metabolic (lactate) as well as central and peripheral (differential RPE) exertion measures compared with ST exercise, suggesting COD exercise evoked a higher exercise intensity. The exercise response alone across both conditions evoked extensive alterations in the methylome 30 min and 24 h post exercise, particularly in MAPK, AMPK and axon guidance pathways. COD evoked a considerably greater hypomethylated signature across the genome compared with ST exercise, particularly at 30 min post exercise, enriched in: Protein binding, MAPK, AMPK, insulin, and axon guidance pathways. Comparative methylome analysis with sprint running transcriptomes identified considerable overlap, with 49% of genes that were altered at the expression level also differentially methylated after COD exercise. After differential methylated region analysis, we observed that VEGFA and its downstream nuclear transcription factor, NR4A1 had enriched hypomethylation within their promoter regions. VEGFA and NR4A1 were also significantly upregulated in the sprint transcriptome and meta-analysis of exercise transcriptomes. We also confirmed increased gene expression of VEGFA, and considerably larger increases in the expression of canonical metabolic genes PPARGC1A (that encodes PGC1-α) and NR4A3 in COD vs. ST exercise. Overall, we demonstrate that increased physiological/metabolic load via COD exercise in human skeletal muscle evokes considerable epigenetic modifications that are associated with changes in expression of genes responsible for adaptation to exercise.

8.
J Cell Physiol ; 236(9): 6534-6547, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-33586196

RESUMEN

Understanding the role of mechanical loading and exercise in skeletal muscle (SkM) is paramount for delineating the molecular mechanisms that govern changes in muscle mass. However, it is unknown whether loading of bioengineered SkM in vitro adequately recapitulates the molecular responses observed after resistance exercise (RE) in vivo. To address this, the transcriptional and epigenetic (DNA methylation) responses were compared after mechanical loading in bioengineered SkM in vitro and after RE in vivo. Specifically, genes known to be upregulated/hypomethylated after RE in humans were analyzed. Ninety-three percent of these genes demonstrated similar changes in gene expression post-loading in the bioengineered muscle when compared to acute RE in humans. Furthermore, similar differences in gene expression were observed between loaded bioengineered SkM and after programmed RT in rat SkM tissue. Hypomethylation occurred for only one of the genes analysed (GRIK2) post-loading in bioengineered SkM. To further validate these findings, DNA methylation and mRNA expression of known hypomethylated and upregulated genes post-acute RE in humans were also analyzed at 0.5, 3, and 24 h post-loading in bioengineered muscle. The largest changes in gene expression occurred at 3 h, whereby 82% and 91% of genes responded similarly when compared to human and rodent SkM respectively. DNA methylation of only a small proportion of genes analyzed (TRAF1, MSN, and CTTN) significantly increased post-loading in bioengineered SkM alone. Overall, mechanical loading of bioengineered SkM in vitro recapitulates the gene expression profile of human and rodent SkM after RE in vivo. Although some genes demonstrated differential DNA methylation post-loading in bioengineered SkM, such changes across the majority of genes analyzed did not closely mimic the epigenetic response to acute-RE in humans.


Asunto(s)
Bioingeniería , Ejercicio Físico/fisiología , Perfilación de la Expresión Génica , Músculo Esquelético/fisiología , Entrenamiento de Fuerza , Adulto , Animales , Línea Celular , Metilación de ADN/genética , Epigénesis Genética , Humanos , Masculino , Mecanotransducción Celular/genética , Ratones , Condicionamiento Físico Animal , Transcripción Genética , Soporte de Peso
9.
Am J Physiol Cell Physiol ; 320(1): C45-C56, 2021 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-33052072

RESUMEN

UBR5 is an E3 ubiquitin ligase positively associated with anabolism, hypertrophy, and recovery from atrophy in skeletal muscle. The precise mechanisms underpinning UBR5's role in the regulation of skeletal muscle mass remain unknown. The present study aimed to elucidate these mechanisms by silencing the UBR5 gene in vivo. To achieve this aim, we electroporated a UBR5-RNAi plasmid into mouse tibialis anterior muscle to investigate the impact of reduced UBR5 on anabolic signaling MEK/ERK/p90RSK and Akt/GSK3ß/p70S6K/4E-BP1/rpS6 pathways. Seven days after UBR5 RNAi electroporation, although reductions in overall muscle mass were not detected, the mean cross-sectional area (CSA) of green fluorescent protein (GFP)-positive fibers were reduced (-9.5%) and the number of large fibers were lower versus the control. Importantly, UBR5-RNAi significantly reduced total RNA, muscle protein synthesis, ERK1/2, Akt, and GSK3ß activity. Although p90RSK phosphorylation significantly increased, total p90RSK protein levels demonstrated a 45% reduction with UBR5-RNAi. Finally, these early events after 7 days of UBR5 knockdown culminated in significant reductions in muscle mass (-4.6%) and larger reductions in fiber CSA (-18.5%) after 30 days. This was associated with increased levels of phosphatase PP2Ac and inappropriate chronic elevation of p70S6K and rpS6 between 7 and 30 days, as well as corresponding reductions in eIF4e. This study demonstrates that UBR5 plays an important role in anabolism/hypertrophy, whereby knockdown of UBR5 culminates in skeletal muscle atrophy.


Asunto(s)
Metabolismo Energético , Músculo Esquelético/enzimología , Atrofia Muscular/enzimología , Ubiquitina-Proteína Ligasas/metabolismo , Animales , Regulación hacia Abajo , Quinasas MAP Reguladas por Señal Extracelular/metabolismo , Técnicas de Silenciamiento del Gen , Glucógeno Sintasa Quinasa 3 beta/metabolismo , Masculino , Ratones Endogámicos C57BL , Músculo Esquelético/patología , Atrofia Muscular/genética , Atrofia Muscular/patología , Fosforilación , Proteínas Proto-Oncogénicas c-akt/metabolismo , Interferencia de ARN , Proteínas Quinasas S6 Ribosómicas 90-kDa/metabolismo , Transducción de Señal , Factores de Tiempo , Ubiquitina-Proteína Ligasas/deficiencia , Ubiquitina-Proteína Ligasas/genética
10.
Phys Rev Lett ; 125(7): 078302, 2020 Aug 14.
Artículo en Inglés | MEDLINE | ID: mdl-32857532

RESUMEN

Homophily between agents and structural balance in connected triads of agents are complementary mechanisms thought to shape social groups leading to, for instance, consensus or polarization. To capture both processes in a unified manner, we propose a model of pair and triadic interactions. We consider N fully connected agents, where each agent has G underlying attributes, and the similarity between agents in attribute space (i.e., homophily) is used to determine the link weight between them. For structural balance we use a triad-updating rule where only one attribute of one agent is changed intentionally in each update, but this also leads to accidental changes in link weights and even link polarities. The link weight dynamics in the limit of large G is described by a Fokker-Planck equation from which the conditions for a phase transition to a fully balanced state with all links positive can be obtained. This "paradise state" of global cooperation is, however, difficult to achieve requiring G>O(N^{2}) and p>0.5, where the parameter p captures a willingness for consensus. Allowing edge weights to be a consequence of attributes naturally captures homophily and reveals that many real-world social systems would have a subcritical number of attributes necessary to achieve structural balance.


Asunto(s)
Modelos Teóricos , Conducta Social , Conducta Cooperativa , Humanos , Red Social
11.
Evol Anthropol ; 29(3): 102-107, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-32544306

RESUMEN

Social scientists have long appreciated that relationships between individuals cannot be described from observing a single domain, and that the structure across domains of interaction can have important effects on outcomes of interest (e.g., cooperation; Durkheim, 1893). One debate explicitly about this surrounds food sharing. Some argue that failing to find reciprocal food sharing means that some process other than reciprocity must be occurring, whereas others argue for models that allow reciprocity to span domains in the form of trade (Kaplan and Hill, 1985.). Multilayer networks, high-dimensional networks that allow us to consider multiple sets of relationships at the same time, are ubiquitous and have consequences, so processes giving rise to them are important social phenomena. The analysis of multi-dimensional social networks has recently garnered the attention of the network science community (Kivelä et al., 2014). Recent models of these processes show how ignoring layer interdependencies can lead one to miss why a layer formed the way it did, and/or draw erroneous conclusions (Górski et al., 2018). Understanding the structuring processes that underlie multiplex networks will help understand increasingly rich data sets, giving more accurate and complete pictures of social interactions.


Asunto(s)
Evolución Biológica , Relaciones Interpersonales , Conducta Social , Red Social , Humanos
12.
Materials (Basel) ; 13(8)2020 Apr 17.
Artículo en Inglés | MEDLINE | ID: mdl-32316378

RESUMEN

This article discusses the problems related to the use of non-contact 3D scanning techniques and their support by means of replication methods for the analysis of the geometrical changes in deep tool impressions used for the forward extrusion of valve-type elements assigned for motor truck engines. The 3D scanning method, despite its unquestionable advantages, also has certain limitations, such as scanning the inner surfaces of deep cavities. This is caused by the fact that the larger the angle between the reflected laser light and the normal direction to the measured surface, the larger the area covered for the analysis, yet at the same time, the higher the measurement error. The authors performed an analysis of the geometrical loss of the tools as well as the corresponding replication masses, together with a discussion of the results related to minimization of the measuring errors. For the analyzed tool, the maximum angle during direct scanning was 40 degrees, which unfortunately does not enable an analysis of the entire pattern, while for larger angles, it is necessary to make the measurement by indirect scanning, i.e., by replicating the cavity imprint of the tool. Therefore, for a given geometry, the reflection angle should be determined individually.

13.
Genes (Basel) ; 11(3)2020 03 12.
Artículo en Inglés | MEDLINE | ID: mdl-32178248

RESUMEN

The chloroplast genomes of liverworts, an early land plant lineage, exhibit stable structure and gene content, however the known resources are very limited. The newly sequenced plastomes of Conocephalum, Riccia and Sphaerocarpos species revealed an increase of simple sequence repeats during the diversification of complex thalloid liverwort lineage. The presence of long TA motifs forced applying the long-read nanopore sequencing method for proper and dependable plastome assembly, since the length of dinucleotide repeats overcome the length of Illumina short reads. The accumulation of SSRs (simple sequence repeats) enabled the expansion of inverted repeats by the incorporation of rps12 and rps7 genes, which were part of large single copy (LSC) regions in the previously sequenced plastomes. The expansion of inverted repeat (IR) at the genus level is reported for the first time for non-flowering plants. Moreover, comparative analyses with remaining liverwort lineages revealed that the presence of SSR in plastomes is specific for simple thalloid species. Phylogenomic analysis resulted in trees confirming monophyly of Marchantiidae and partially congruent with previous studies, due to dataset-dependent results of Dumortiera-Reboulia relationships. Despite the lower evolutionary rate of Marchantiales plastomes, significant barcoding gap was detected, even for recently divergent holarctic Conocephalum species. The sliding window analyses revealed the presence of 18 optimal (500 bp long) barcodes that enable the molecular identification of all studied species.


Asunto(s)
Embryophyta/genética , Hepatophyta/genética , Secuencias Invertidas Repetidas/genética , Repeticiones de Microsatélite/genética , Embryophyta/crecimiento & desarrollo , Evolución Molecular , Genoma del Cloroplasto/genética , Hepatophyta/crecimiento & desarrollo , Secuenciación de Nucleótidos de Alto Rendimiento , Filogenia
14.
J Physiol ; 597(14): 3727-3749, 2019 07.
Artículo en Inglés | MEDLINE | ID: mdl-31093990

RESUMEN

KEY POINTS: We have recently identified that a HECT domain E3 ubiquitin ligase, named UBR5, is altered epigenetically (via DNA methylation) after human skeletal muscle hypertrophy, where its gene expression is positively correlated with increasing lean leg mass after training and retraining. In the present study we extensively investigate this novel and uncharacterised E3 ubiquitin ligase (UBR5) in skeletal muscle atrophy, recovery from atrophy and injury, anabolism and hypertrophy. We demonstrated that UBR5 was epigenetically altered via DNA methylation during recovery from atrophy. We also determined that UBR5 was alternatively regulated versus well characterised E3 ligases, MuRF1/MAFbx, at the gene expression level during atrophy, recovery from atrophy and hypertrophy. UBR5 also increased at the protein level during recovery from atrophy and injury, hypertrophy and during human muscle cell differentiation. Finally, in humans, genetic variations of the UBR5 gene were strongly associated with larger fast-twitch muscle fibres and strength/power performance versus endurance/untrained phenotypes. ABSTRACT: We aimed to investigate a novel and uncharacterized E3 ubiquitin ligase in skeletal muscle atrophy, recovery from atrophy/injury, anabolism and hypertrophy. We demonstrated an alternate gene expression profile for UBR5 vs. well characterized E3-ligases, MuRF1/MAFbx, where, after atrophy evoked by continuous-low-frequency electrical-stimulation in rats, MuRF1/MAFbx were both elevated, yet UBR5 was unchanged. Furthermore, after recovery of muscle mass post TTX-induced atrophy in rats, UBR5 was hypomethylated and increased at the gene expression level, whereas a suppression of MuRF1/MAFbx was observed. At the protein level, we also demonstrated a significant increase in UBR5 after recovery of muscle mass from hindlimb unloading in both adult and aged rats, as well as after recovery from atrophy evoked by nerve crush injury in mice. During anabolism and hypertrophy, UBR5 gene expression increased following acute loading in three-dimensional bioengineered mouse muscle in vitro, and after chronic electrical stimulation-induced hypertrophy in rats in vivo, without increases in MuRF1/MAFbx. Additionally, UBR5 protein abundance increased following functional overload-induced hypertrophy of the plantaris muscle in mice and during differentiation of primary human muscle cells. Finally, in humans, genetic association studies (>700,000 single nucleotide polymorphisms) demonstrated that the A alleles of rs10505025 and rs4734621 single nucleotide polymorphisms in the UBR5 gene were strongly associated with larger cross-sectional area of fast-twitch muscle fibres and favoured strength/power vs. endurance/untrained phenotypes. Overall, we suggest that: (i) UBR5 comprises a novel E3 ubiquitin ligase that is inversely regulated to MuRF1/MAFbx; (ii) UBR5 is epigenetically regulated; and (iii) UBR5 is elevated at both the gene expression and protein level during recovery from skeletal muscle atrophy and hypertrophy.


Asunto(s)
Hipertrofia/metabolismo , Músculo Esquelético/metabolismo , Atrofia Muscular/metabolismo , Ubiquitina-Proteína Ligasas/metabolismo , Animales , Suspensión Trasera/fisiología , Humanos , Masculino , Ratones Endogámicos C57BL , Células Musculares/metabolismo , Proteínas Musculares/metabolismo , Polimorfismo de Nucleótido Simple/fisiología , Ratas , Ratas Wistar
15.
BMC Plant Biol ; 18(1): 321, 2018 Dec 03.
Artículo en Inglés | MEDLINE | ID: mdl-30509184

RESUMEN

BACKGROUND: Comparative analyses of chloroplast and mitochondrial genomes have shown that organelle genomes in bryophytes evolve slowly. However, in contrast to seed plants, the organellar genomes are yet poorly explored in bryophytes, especially among liverworts. Discovering another organellar genomes of liverwort species by sequencing provides new conclusions on evolution of bryophytes. RESULTS: In this work, the organellar genomes of Gymnomitrion concinnatum liverwort were sequenced, assembled and annotated for the first time. The chloroplast genome displays, typical for most plants, quadripartite structure containing large single copy region (81,701 bp), two inverted repeat regions (8704 bp each) and small single copy region (20,179 bp). The gene order and content of chloroplast are very similar to other liverworts with minor differences observed. A total number of 739 and 222 RNA editing sites were predicted in chloroplast and mitochondrial genes of G. concinnatum. The mitochondrial genome gene content is also in accordance with liverworts except few alterations such as: intron loss in cox1 and atp1 genes. Nonetheless the analysis revealed that G. concinnatum mitogenome structure and gene order are rearranged in comparison with other mitogenomes of liverworts. The causes underlying such mitogenomic rearrangement were investigated and the probable model of recombination was proposed. CONCLUSIONS: This study provide the overview of mitochondrial and chloroplast genome structure and gene order diversity of Gymnomitrion concinnatum against the background of known organellar genomes of liverworts. The obtained results cast doubt on the idea that mitogenome structure of early land plants is highly conserved as previous studies suggested. In fact is the very first case of recombination within, evolutionary stable, mitogenomes of liverworts.


Asunto(s)
Orden Génico/genética , Genoma del Cloroplasto/genética , Genoma Mitocondrial/genética , Genoma de Planta/genética , Hepatophyta/genética , Evolución Biológica , Reordenamiento Génico/genética , Filogenia
16.
Sci Rep ; 7(1): 16047, 2017 11 22.
Artículo en Inglés | MEDLINE | ID: mdl-29167566

RESUMEN

We consider the problem of Heider balance in a link multiplex, i.e. a special multiplex where coupling exists only between corresponding links. Numerical simulations and analytical calculations demonstrate that the presence of such interlayer connections hinders the emergence of the Heider balance. The effect is especially pronounced when the interactions between layers are negative, similarly as in antiferromagnetically coupled spin layers. The larger is the network, the narrower is the region of coupling parameters where the Heider balance can exist. If the interlayer couplings are of opposite signs and are strong enough, then the link dynamics can be reduced to the system of weakly coupled harmonic oscillators. For large strongly-coupled networks and randomly chosen initial conditions the probability of attaining the Heider balance decreases with the network size N as [Formula: see text]. Our finding can explain a lack of the Heider balance in many social systems, where multilayer structures mediate social interactions.

17.
Kwart Hist Nauki Tech ; 52(3-4): 131-64, 2007.
Artículo en Polaco | MEDLINE | ID: mdl-19043898

RESUMEN

The paper deals with the issue of Polish intelligentsia in the inter-war period (1918-1939). In the introduction, the author presents various approaches that can be adopted in investigating this problem, approaches that focus on the analysis of the social awareness of that social stratum and on its transformations form the perspective of social structure. Further on in the paper, the author points to the image of Polish intelligentsia of that period as it emerges from an analysis of the feature writing of the period, i.e. to the image of the intelligentsia's self-awareness, and to the image that is revealed in the writings of historians of the inter-war period. Finally, in the main section of the paper, the author presents the views of four sociologists who lived and worked in the interwar period who dealt with the issue of the Polish intelligentsia: Florian Znaniecki (1882-1958), Aleksander Hertz (1895-1983), Stanislaw Rychlinski (1903-1944) and Józef Chalasinski (1904-1979). The views of those sociologists are juxtaposed with opinions of journalists and historians, to see how valuable and original such views were. Their views on the intelligentsia are also analysed against the background of the developments in sociology of that period, of the areas or interest of the sociologists involved, and of the theoretical frameworks which they followed. The sociologists' research on the intelligentsia can be seen as part of a wider range of studies on transformations in culture (Znaniecki, Hertz) and social structure (Rychlinski, Chalasinski). All four sociologists pointed to the changes that the Polish intelligentsia was subject to and to the problems involved in implementing its leadership role. Apart from Chalasinski, the sociologists appreciated the positive role of the intelligentsia in Polish society and indicated the need to take measures aimed at reconstructing the paths of advancement into the social elite, a great role in which was attributed to educational institutions. The issues of social advancement, and especially the discussions concerning the social elite, were well in tune with debates that were to be found in magazines and journals, but they were characterized by a different, sociological perspective, which took account of the transformations in social structure and in culture, and of the achievements of the rapidly developing sub-discipline of sociology, namely the sociology of education.


Asunto(s)
Sociología/historia , Historia del Siglo XX , Polonia , Escritura/historia
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